Knowledge sharing
The HiC course took place on June 9-14, 2024 at BMC Uppsala.
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Knowledge sharing from the lab
At the end of the lab period, the AssemblyLink, Challenging Samples, and Introductory HiC groups gave an overview of their work, including discussion of the outcome.
Giada Ferrari, presenting the Challenging Samples lab results
Irene Fabiola Roman Maldonado, presenting the Introductory HiC lab results
Knowledge sharing between institutions
Protocol differences
A representative from each institution presented the specifics of their sample handling
Karine Labadie, Genoscope, presenting tissue grinding
Giada Ferrari, University of Oslo, presenting nuclei isolation used with plants
Challenging Samples
Each institution presented their own handling of samples, including nuclei isolation, kits, what organisms they had success with, as well as sample outcomes.
Fernando Cruz, CNAG, presenting a bioinformatic view of HiC QC
Mårten Skage, University of Oslo, presenting results from Monogyna spp.
Mårten Skage, University of Oslo, presenting results from AssemblyLink on Fish Blood
Karine Labadie, Genoscope, presenting Plant and Lichen samples
Irene Fabiola Roman Maldonado, Sanger Institute, presenting plant and lichen protocols
Lily Shiue, Dovetail, presenting AssemblyLink results with Meara and Algae
Mårten Skage, University of Oslo, presents how to define and approach challenging samples
Presentations on Arima & Dovetail HiC protocols
The companies producing and validating the protocols and chemistries used in the course presented about their kits.